Deatailed information for gene ENSG00000233818
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031700
- Gene Symbol: AP000695.2
- Ensembl ID: ENSG00000233818
-
Gene locus: chr21:36445730-36532408
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1970
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.462
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,Liver,ARPE-19,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,SU-DHL-4,NPC-H9,RT-112,Skin-Fibroblast,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:34350000-34375000~~chr21:36500000-36525000,
chr21:36125000-36150000~~chr21:36500000-36525000,
chr21:36400000-36425000~~chr21:36500000-36525000,
chr21:36419354-36421097~~chr21:36503272-36505466,
chr21:36421453-36423350~~chr21:36477710-36479878,
chr21:36425000-36450000~~chr21:36575000-36600000,
chr21:36425000-36450000~~chr21:38300000-38325000,
chr21:36425000-36450000~~chr21:39125000-39150000,
chr21:36429235-36431507~~chr21:36456350-36458004,
chr21:36429275-36431150~~chr21:36477549-36479573,
chr21:36429321-36431439~~chr21:36456106-36458114,
chr21:36475000-36500000~~chr21:36575000-36600000,
chr21:36475000-36500000~~chr21:36725000-36750000,
chr21:36475000-36500000~~chr21:36900000-36925000,
chr21:36475000-36500000~~chr21:36925000-36950000,
chr21:36477778-36479875~~chr21:36490518-36492345,
chr21:36478462-36479768~~chr21:36588710-36590304,
chr21:36500000-36525000~~chr21:36600000-36625000,
chr21:36500000-36525000~~chr21:36625000-36650000,
chr21:36500000-36525000~~chr21:36675000-36700000,
chr21:36500000-36525000~~chr21:36725000-36750000,
chr21:36500000-36525000~~chr21:36825000-36850000,
chr21:36500000-36525000~~chr21:36900000-36925000,
chr21:36500000-36525000~~chr21:36925000-36950000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38250000-38275000,
chr21:36500000-36525000~~chr21:38350000-38375000,
chr21:36503141-36505653~~chr21:36926664-36928827,
chr21:36503201-36505454~~chr21:36588523-36590639,
chr21:36503201-36505454~~chr21:36926683-36929117,
chr21:36503222-36505451~~chr21:36588498-36590583,
chr21:36503227-36505444~~chr21:36588271-36590801,
chr21:36503227-36505444~~chr21:36926436-36929179,
chr21:36503239-36505647~~chr21:36926716-36929066,
chr21:36503239-36505666~~chr21:36541464-36544173,
chr21:36503239-36505666~~chr21:36588542-36590630,
chr21:36503245-36505660~~chr21:36926711-36929324,
chr21:36503265-36505404~~chr21:36588528-36590557,
chr21:36503270-36505647~~chr21:36926678-36929090,
chr21:36503272-36505466~~chr21:36588498-36590567,
chr21:36503272-36505466~~chr21:36916749-36918779,
chr21:36503272-36505466~~chr21:36926649-36929131,
chr21:36503276-36505640~~chr21:36541472-36543876,
chr21:36503276-36505640~~chr21:36588493-36590531,
chr21:36503276-36505640~~chr21:36926695-36929067,
chr21:36503288-36505684~~chr21:36541257-36544117,
chr21:36503288-36505684~~chr21:36588485-36590701,
chr21:36503288-36505684~~chr21:36629965-36632036,
chr21:36503297-36505454~~chr21:36926751-36928873,
chr21:36503297-36505649~~chr21:36541207-36544114,
chr21:36503297-36505649~~chr21:36588501-36590672,
chr21:36503297-36505649~~chr21:36853680-36855572,
chr21:36503297-36505649~~chr21:36916842-36918389,
chr21:36503297-36505649~~chr21:36926717-36929094,
chr21:36503300-36505643~~chr21:36916612-36918723,
chr21:36503300-36505643~~chr21:36926687-36928814,
chr21:36503303-36505614~~chr21:36588734-36590540,
chr21:36503304-36505537~~chr21:36588530-36590785,
chr21:36503304-36505537~~chr21:36926465-36928856,
chr21:36503313-36505627~~chr21:36926505-36928808,
chr21:36503329-36505471~~chr21:36926683-36929090,
chr21:36503476-36505662~~chr21:36926726-36928770,
chr21:36503483-36505671~~chr21:36541462-36543965,
chr21:36503483-36505671~~chr21:36588474-36590657,
chr21:36503483-36505671~~chr21:36916655-36918813,
chr21:36503483-36505671~~chr21:36926706-36929092,
chr21:36503492-36505441~~chr21:36926698-36929094,
chr21:36503500-36505460~~chr21:36542054-36543828,
chr21:36503500-36505460~~chr21:36588511-36590472,
chr21:36503500-36505460~~chr21:36853738-36855617,
chr21:36503508-36505467~~chr21:36542130-36543832,
chr21:36503512-36505449~~chr21:36588675-36590309,
chr21:36503512-36505449~~chr21:36926642-36928684,
chr21:36503513-36505278~~chr21:36926493-36928737,
chr21:36503551-36505606~~chr21:36588646-36590268,
chr21:36503555-36505459~~chr21:36926705-36929148,
chr21:36503560-36505442~~chr21:36588600-36590428,
chr21:36503560-36505442~~chr21:36926670-36928671,
chr21:36503560-36505447~~chr21:36542235-36543689,
chr21:36503560-36505447~~chr21:36587180-36588484,
chr21:36503560-36505447~~chr21:36588574-36590548,
chr21:36503645-36505444~~chr21:36926732-36929011,
chr21:36503662-36505206~~chr21:36588817-36590277,
chr21:36503662-36505206~~chr21:36938871-36940246,
chr21:36503767-36505384~~chr21:36588667-36590330,
chr21:36503767-36505530~~chr21:36541813-36544170,
chr21:36503767-36505530~~chr21:36588716-36590491,
chr21:36503774-36505468~~chr21:36542261-36543875,
chr21:36503774-36505468~~chr21:36588596-36590469,
chr21:36503774-36505468~~chr21:36926932-36928694,
chr21:36503775-36505445~~chr21:36541324-36544050,
chr21:36503775-36505593~~chr21:36542212-36543904,
chr21:36503775-36505593~~chr21:36588685-36590306,
chr21:36503783-36505447~~chr21:36542194-36544140,
chr21:36503791-36505388~~chr21:36541297-36543916,
chr21:36525000-36550000~~chr21:41350000-41375000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIRKGMZRQ, ENCSR668RDP, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE116872, ENCSR305RTT, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE118716, ENCSR499RVD, GSE155380, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIH7TH4MF, ENCSR194SRI, 4DNFI6CWNUFL, GSE120294, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, GSE165038, 4DNFIALNLR78, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR255XYX, ENCSR404HWQ, ENCSR933UZH, ENCSR094EIC, GSE58752, GSE116869, 4DNFI8649RQJ, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR866FWQ, ENCSR381DCY, ENCSR981FNA, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .