Deatailed information for gene ENSG00000233922
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031778
- Gene Symbol: LINC01694
- Ensembl ID: ENSG00000233922
-
Gene locus: chr21:45593653-45603056
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.3214
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.714
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-endodermal,IMR-90,TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,H1-Mesenchymal,Hepatocyte-H9,MCF-7,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,SU-DHL-2,NCI-H1437,ARPE-19,Hep-G2,HT-1197,Kelly,H1-hESC,HT-1376,GM19238,MSLCL,SU-DHL-4,NPC-H9,Skin-Fibroblast,Jurkat,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:29675000-29700000~~chr21:45600000-45625000,
chr21:45125000-45150000~~chr21:45575000-45600000,
chr21:45139555-45141248~~chr21:45595927-45597822,
chr21:45139756-45141227~~chr21:45595881-45597823,
chr21:45443298-45445960~~chr21:45595973-45597848,
chr21:45443387-45444597~~chr21:45595921-45597751,
chr21:45477292-45479145~~chr21:45595881-45597823,
chr21:45477348-45479204~~chr21:45595879-45597829,
chr21:45477385-45479624~~chr21:45595863-45597829,
chr21:45477564-45479060~~chr21:45595980-45597669,
chr21:45554040-45556961~~chr21:45595973-45597835,
chr21:45554054-45556956~~chr21:45595929-45597843,
chr21:45554081-45557001~~chr21:45595879-45597829,
chr21:45554102-45556956~~chr21:45595952-45597736,
chr21:45554110-45556838~~chr21:45595949-45597798,
chr21:45554116-45557239~~chr21:45595926-45597851,
chr21:45554119-45557159~~chr21:45595927-45597579,
chr21:45554143-45556979~~chr21:45595828-45597845,
chr21:45554152-45556956~~chr21:45595863-45597829,
chr21:45554175-45556950~~chr21:45596075-45597591,
chr21:45554175-45557619~~chr21:45595128-45597851,
chr21:45554177-45557278~~chr21:45595949-45597849,
chr21:45554195-45556971~~chr21:45595813-45597858,
chr21:45554202-45556971~~chr21:45595963-45597837,
chr21:45554214-45557007~~chr21:45595996-45597719,
chr21:45554223-45557030~~chr21:45596036-45597562,
chr21:45554236-45556906~~chr21:45596001-45597798,
chr21:45554237-45556867~~chr21:45595881-45597823,
chr21:45554245-45556897~~chr21:45595980-45597669,
chr21:45554248-45557000~~chr21:45595927-45597822,
chr21:45554252-45557219~~chr21:45595919-45597671,
chr21:45554265-45556926~~chr21:45595942-45597733,
chr21:45554269-45557151~~chr21:45595915-45597807,
chr21:45554270-45556959~~chr21:45595948-45597591,
chr21:45554282-45557370~~chr21:45595721-45597781,
chr21:45554287-45556968~~chr21:45590787-45592560,
chr21:45554287-45556968~~chr21:45596076-45597589,
chr21:45554290-45556966~~chr21:45595867-45597858,
chr21:45554297-45556971~~chr21:45595921-45597751,
chr21:45554297-45557117~~chr21:45596246-45597503,
chr21:45554301-45556971~~chr21:45595924-45597692,
chr21:45554315-45556912~~chr21:45596110-45597788,
chr21:45554317-45556991~~chr21:45596022-45597537,
chr21:45554319-45557073~~chr21:45596152-45597534,
chr21:45554322-45556956~~chr21:45595973-45597752,
chr21:45554345-45557074~~chr21:45596127-45597522,
chr21:45554350-45556959~~chr21:45595979-45597730,
chr21:45554359-45556990~~chr21:45595975-45597766,
chr21:45554407-45556897~~chr21:45595171-45597684,
chr21:45554407-45556976~~chr21:45595965-45597845,
chr21:45554441-45556961~~chr21:45595981-45597772,
chr21:45575000-45600000~~chr21:45725000-45750000,
chr21:45575000-45600000~~chr21:45800000-45825000,
chr21:45575000-45600000~~chr21:45900000-45925000,
chr21:45575000-45600000~~chr21:45925000-45950000,
chr21:45575000-45600000~~chr21:46100000-46125000,
chr21:45600000-45625000~~chr21:46100000-46125000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE43070, 4DNFIBRSIPE4, GSE118716, 4DNFI5SUHCGZ, ENCSR361AYD, ENCSR672RHL, ENCSR146FPM, GSE103148, 4DNFIILDWK8M, ENCSR478BMT, ENCSR732QOH, ENCSR668RDP, ENCSR381DCY, ENCSR981FNA, ENCSR587DSF, ENCSR452NHL, ENCSR752QCX, 4DNFIE8T8JZ8, ENCSR128RPG, GSE52457, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFISPUVQHA, ENCSR386KHY, ENCSR244BBG, ENCSR393LOP, ENCSR991JXX, 4DNFIC3HAU11, ENCSR255XYX, ENCSR000FDB, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, ENCSR527RXH, ENCSR933UZH, ENCSR833CMG, ENCSR033GUP
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .