Deatailed information for gene ENSG00000233956

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00031804
  • Gene Symbol: BTF3P6
  • Ensembl ID: ENSG00000233956
  • Gene locus: chr21:33518609-33519108 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1432 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.644
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,H1-hESC,A-549,HFFc6,H9-hESC
  • Related loop: chr21:29050000-29075000~~chr21:33500000-33525000, chr21:32325000-32350000~~chr21:33500000-33525000, chr21:32375000-32400000~~chr21:33500000-33525000, chr21:33375000-33400000~~chr21:33500000-33525000, chr21:33500000-33525000~~chr21:33600000-33625000, chr21:33500000-33525000~~chr21:37150000-37175000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: ENCSR662QKG, 4DNFII6AN691, Direct, 4DNFIMROE6N4, GSE105028, ENCSR499RVD, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, ENCSR244BBG, 4DNFIIMZB6Y9, ENCSR410MDC
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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