Deatailed information for gene ENSG00000233997
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031831
- Gene Symbol: LINC01425
- Ensembl ID: ENSG00000233997
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Gene locus: chr21:21746984-21797415
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1064
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HFF-hTERT,H9-hESC,HFFc6,H1-hESC
- Related loop:
chr21:21000000-21025000~~chr21:21750000-21775000,
chr21:21725000-21750000~~chr21:21925000-21950000,
chr21:21750000-21775000~~chr21:22775000-22800000,
chr21:21800000-21825000~~chr21:21900000-21925000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIE8T8JZ8, Direct, 4DNFISPUVQHA, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .