Deatailed information for gene ENSG00000234034

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  • Basic information
  • CohesinDB ID: CDBG00031854
  • Gene Symbol: AP000959.1
  • Ensembl ID: ENSG00000234034
  • Gene locus: chr21:22500603-22520058 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1314 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: K-562,H1-hESC,HFF-hTERT,HFFc6,HeLa-S3,H9-hESC
  • Related loop: chr21:21225000-21250000~~chr21:22525000-22550000, chr21:22175000-22200000~~chr21:22475000-22500000, chr21:22425000-22450000~~chr21:22525000-22550000, chr21:22475000-22500000~~chr21:22725000-22750000, chr21:22525000-22550000~~chr21:22700000-22725000, chr21:22525000-22550000~~chr21:22775000-22800000, chr21:22525000-22550000~~chr21:23000000-23025000, chr21:22525000-22550000~~chr21:44650000-44675000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFIPAF4PYT, Direct, 4DNFIMROE6N4, 4DNFIFI6NIKJ, 4DNFISPUVQHA, 4DNFIFLJLIS5, GSE105028, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICEGAHRC
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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