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Basic information

CohesinDB ID: CDBG00031864

Gene Symbol: LINC01673

Ensembl ID: ENSG00000234052

Gene locus: chr21:27638649-27675012 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1449 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MB157,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,SARS-Cov2-olfactory,HFFc6,HeLa-S3,H1-Trophectoderm,KU-19-19,H9-hESC,REC-1,H1-hESC,Motor-Neuron,U-937,RT-112,CC-2551,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, GSE95015, 4DNFIWZEN3FF, 4DNFIRZA6EV6, GSE116875, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR866FWQ, 4DNFIRKGMZRQ, GSE155380, 4DNFIV239W4L, 4DNFIE8T8JZ8, 4DNFISTWNV9C, GSE52457, 4DNFI6XD6JAQ, Direct, GSE165038, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR228TUX, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, ENCSR305RTT, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, GSE105028, 4DNFIS5F6EBL, 4DNFIBKZK63V, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000234052