Deatailed information for gene ENSG00000234083

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  • Basic information
  • CohesinDB ID: CDBG00031885
  • Gene Symbol: AJ006995.1
  • Ensembl ID: ENSG00000234083
  • Gene locus: chr21:27954921-27985295 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0640 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,Hep-G2,IMR-90,K-562,KBM-7,H1-hESC,Motor-Neuron,HFF-hTERT,HFFc6,HeLa-S3,Olfactory,CyT49-hESC
  • Related loop: chr21:13250000-13275000~~chr21:27925000-27950000, chr21:13250000-13275000~~chr21:27950000-27975000, chr21:27800000-27825000~~chr21:27950000-27975000, chr21:27825000-27850000~~chr21:27975000-28000000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIMROE6N4, 4DNFI5SUHCGZ, 4DNFIF2D3TL9, 4DNFIKYXMF1E, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, Direct, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFI1UEG1HD, ENCSR305RTT, 4DNFI2J1ODWB, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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