Deatailed information for gene ENSG00000234159
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00031937
- Gene Symbol: RBPMSLP
- Ensembl ID: ENSG00000234159
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Gene locus: chr21:15744003-15745080
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0182
FDR = 0.0186
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HEK293T,Liver,SARS-Cov2-olfactory,GM12878,K-562,H1-hESC,A-549,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:14075000-14100000~~chr21:15725000-15750000,
chr21:14375000-14400000~~chr21:15725000-15750000,
chr21:14875000-14900000~~chr21:15725000-15750000,
chr21:14975000-15000000~~chr21:15725000-15750000,
chr21:15625000-15650000~~chr21:15725000-15750000,
chr21:15725000-15750000~~chr21:15825000-15850000,
chr21:15725000-15750000~~chr21:16400000-16425000,
chr21:15725000-15750000~~chr21:17600000-17625000,
chr21:15725000-15750000~~chr21:17775000-17800000,
chr21:15750000-15775000~~chr21:15850000-15875000,
chr21:15750000-15775000~~chr21:16175000-16200000,
chr21:15750000-15775000~~chr21:17050000-17075000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
ENCSR662QKG, 4DNFIWZEN3FF, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIBXWIH8J, 4DNFICEGAHRC, GSE52457, Direct, 4DNFIAS8LV1C, 4DNFI1UEG1HD, 4DNFIZF1KI43, ENCSR393LOP, GSE44267, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE105028, 4DNFIS5F6EBL, GSE58752
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .