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Basic information

CohesinDB ID: CDBG00032035

Gene Symbol: BACH1-IT3

Ensembl ID: ENSG00000234293

Gene locus: chr21:29496046-29500386 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0385 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,DU145,Keratinocytes192627,K1,H1-Mesenchymal,Olfactory,MCF-7,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,LNCaP,H9-hESC,KU-19-19,Liver,REC-1,ARPE-19,Hep-G2,HT-1197,H1-hESC,HCC1599,Motor-Neuron,MSLCL,SU-DHL-4,HUVEC,HL-60,RT-112,CyT49-endoderm,Skin-Fibroblast,KBM-7,CyT49-Gut,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, ENCSR194SRI, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, 4DNFITUOMFUQ, 4DNFIE8E4ANZ, GSE108787, ENCSR794RDS, GSE94872, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, GSE120294, ENCSR146FPM, ENCSR672RHL, 4DNFIZ4F74QR, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIP25GZGA, ENCSR113OIR, 4DNFII6AN691, 4DNFIRKGMZRQ, GSE131580, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIL9M97T2, 4DNFI9YAVTI1, 4DNFIBT4EAKN, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI8Y9SRP2, GSE116872, 4DNFIEJEFCAM, ENCSR228TUX, ENCSR393LOP, 4DNFI9815EEJ, 4DNFIAWVDQ8C, 4DNFIC3HAU11, 4DNFIPAF4PYT, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR305RTT, ENCSR110JOO, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000234293