Deatailed information for gene ENSG00000234380
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00032084
- Gene Symbol: LINC01426
- Ensembl ID: ENSG00000234380
-
Gene locus: chr21:34745756-34784886
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.2124
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.601
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,iPSC,REC-1,HCT-116,Hep-G2,HT-1197,H1-hESC,HCC1599,HT-1376,Motor-Neuron,MSLCL,NaiveB,GM19240,U-937,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,KBM-7,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:34350000-34375000~~chr21:34725000-34750000,
chr21:34350000-34375000~~chr21:34750000-34775000,
chr21:34350000-34375000~~chr21:34775000-34800000,
chr21:34534100-34535436~~chr21:34766515-34767688,
chr21:34675000-34700000~~chr21:34775000-34800000,
chr21:34725000-34750000~~chr21:34825000-34850000,
chr21:34725000-34750000~~chr21:34850000-34875000,
chr21:34725000-34750000~~chr21:34875000-34900000,
chr21:34725000-34750000~~chr21:35025000-35050000,
chr21:34725000-34750000~~chr21:35200000-35225000,
chr21:34725000-34750000~~chr21:35400000-35425000,
chr21:34725000-34750000~~chr21:35500000-35525000,
chr21:34725000-34750000~~chr21:35600000-35625000,
chr21:34725000-34750000~~chr21:35825000-35850000,
chr21:34725000-34750000~~chr21:35925000-35950000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34743262-34746775~~chr21:35399352-35402534,
chr21:34743262-34746775~~chr21:35507734-35509545,
chr21:34743265-34746806~~chr21:35507719-35509586,
chr21:34743512-34746717~~chr21:35399678-35401615,
chr21:34744447-34746791~~chr21:35399674-35401602,
chr21:34744447-34746791~~chr21:35507750-35509614,
chr21:34744498-34746753~~chr21:35399738-35401521,
chr21:34744530-34746777~~chr21:34887476-34892097,
chr21:34744530-34746777~~chr21:35399848-35401817,
chr21:34744530-34746777~~chr21:35614293-35617009,
chr21:34744539-34746791~~chr21:35399305-35401597,
chr21:34744539-34746791~~chr21:35507739-35509404,
chr21:34744552-34746822~~chr21:35507858-35509465,
chr21:34744561-34746765~~chr21:34887508-34892091,
chr21:34744561-34746765~~chr21:35399885-35401612,
chr21:34744561-34746765~~chr21:35615361-35617172,
chr21:34744567-34746780~~chr21:35188780-35191250,
chr21:34744567-34746780~~chr21:35399613-35401825,
chr21:34744567-34746780~~chr21:35615336-35617206,
chr21:34744574-34746750~~chr21:35507769-35509498,
chr21:34744580-34747072~~chr21:35399810-35401595,
chr21:34744581-34746732~~chr21:35399641-35401580,
chr21:34744589-34746918~~chr21:35399325-35401608,
chr21:34744589-34746918~~chr21:35507735-35509518,
chr21:34744589-34746918~~chr21:35615292-35617215,
chr21:34744610-34746779~~chr21:35507406-35509556,
chr21:34744610-34746779~~chr21:35602844-35604275,
chr21:34744631-34746764~~chr21:35399233-35401565,
chr21:34744640-34746731~~chr21:35399927-35401584,
chr21:34744749-34746554~~chr21:35399692-35401398,
chr21:34744771-34746620~~chr21:35399417-35401599,
chr21:34744771-34746620~~chr21:35615456-35617044,
chr21:34744773-34746587~~chr21:35399649-35401523,
chr21:34744777-34746623~~chr21:35507640-35509736,
chr21:34744780-34746750~~chr21:35399619-35401488,
chr21:34744787-34746612~~chr21:35507728-35509232,
chr21:34744787-34746612~~chr21:35615562-35617011,
chr21:34744790-34746552~~chr21:35399665-35401305,
chr21:34744790-34746552~~chr21:35507844-35509236,
chr21:34744815-34746785~~chr21:35398829-35401607,
chr21:34744820-34746780~~chr21:35507828-35509473,
chr21:34744836-34747063~~chr21:35398212-35401570,
chr21:34744840-34746785~~chr21:35399637-35401641,
chr21:34744840-34746785~~chr21:35507813-35509465,
chr21:34744840-34746785~~chr21:35615343-35617201,
chr21:34744848-34746795~~chr21:35399380-35401604,
chr21:34744855-34746749~~chr21:34887552-34891083,
chr21:34744866-34746754~~chr21:34887518-34891075,
chr21:34744866-34746754~~chr21:35507843-35509232,
chr21:34744879-34746754~~chr21:34888325-34891071,
chr21:34744884-34746937~~chr21:35399872-35401634,
chr21:34744884-34746937~~chr21:35615517-35617148,
chr21:34744887-34746720~~chr21:35399838-35401610,
chr21:34744917-34746726~~chr21:35399887-35401622,
chr21:34744927-34746749~~chr21:35507798-35509438,
chr21:34745037-34746426~~chr21:35399955-35401288,
chr21:34750000-34775000~~chr21:34850000-34875000,
chr21:34750000-34775000~~chr21:34875000-34900000,
chr21:34750000-34775000~~chr21:35000000-35025000,
chr21:34750000-34775000~~chr21:35400000-35425000,
chr21:34750000-34775000~~chr21:35500000-35525000,
chr21:34750000-34775000~~chr21:35600000-35625000,
chr21:34750000-34775000~~chr21:35775000-35800000,
chr21:34750000-34775000~~chr21:35825000-35850000,
chr21:34750000-34775000~~chr21:35925000-35950000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36025000-36050000,
chr21:34762299-34763454~~chr21:35399305-35401597,
chr21:34766515-34767688~~chr21:35234194-35236987,
chr21:34775000-34800000~~chr21:34875000-34900000,
chr21:34775000-34800000~~chr21:34975000-35000000,
chr21:34775000-34800000~~chr21:35000000-35025000,
chr21:34775000-34800000~~chr21:35025000-35050000,
chr21:34775000-34800000~~chr21:35350000-35375000,
chr21:34775000-34800000~~chr21:35400000-35425000,
chr21:34775000-34800000~~chr21:35500000-35525000,
chr21:34775000-34800000~~chr21:35725000-35750000,
chr21:34775000-34800000~~chr21:35825000-35850000,
chr21:34775000-34800000~~chr21:35850000-35875000,
chr21:34775000-34800000~~chr21:35925000-35950000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, GSE116872, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, GSE105028, ENCSR033GUP, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, ENCSR146FPM, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIM2BMJ33, GSE165038, 4DNFIYDBBSE3, ENCSR386KHY, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIP25GZGA, 4DNFI6EIFUZI, 4DNFII6AN691, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR128RPG, ENCSR312TUD, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR338WUS, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .