Deatailed information for gene ENSG00000234730
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00032325
- Gene Symbol: AP001117.1
- Ensembl ID: ENSG00000234730
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Gene locus: chr21:21566762-21615437
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0693
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,RT-112,K-562,H1-hESC,HFF-hTERT,HeLa-S3,H9-hESC
- Related loop:
chr21:20625000-20650000~~chr21:21600000-21625000,
chr21:21175000-21200000~~chr21:21600000-21625000,
chr21:21225000-21250000~~chr21:21600000-21625000,
chr21:21350000-21375000~~chr21:21600000-21625000,
chr21:21500000-21525000~~chr21:21600000-21625000,
chr21:21550000-21575000~~chr21:23525000-23550000,
chr21:21600000-21625000~~chr21:21900000-21925000,
chr21:21600000-21625000~~chr21:22625000-22650000,
chr21:21600000-21625000~~chr21:23475000-23500000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE44267, 4DNFI8649RQJ, 4DNFIVJ3IIQL, Direct, 4DNFIDJ2JZ7Q, GSE105028, GSE108787, 4DNFIDBIEXI7, GSE155380, 4DNFIW8TIFI5, 4DNFI7H4II2V
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .