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Basic information

CohesinDB ID: CDBG00032523

Gene Symbol: AP001626.1

Ensembl ID: ENSG00000235023

Gene locus: chr21:42648270-42651244 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2149 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.541
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,iPSC,GM12891,GM12878,NPC-H9,Hep-G2,TAMR-MCF7,H1-hESC,DU145,HFFc6,MCF7-FASR,PAEC,HeLa-S3,K1,U-937,HUVEC

Cohesin-loop type: HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIAWVDQ8C, ENCSR247RGI, 4DNFI5LCW273, ENCSR194SRI, ENCSR299VMZ, ENCSR314HAC, Direct, ENCSR668RDP, 4DNFIFLJLIS5, 4DNFIMROE6N4, 4DNFIOUSETUP, 4DNFI1UEG1HD, GSE118716, GSE165038, 4DNFIJWBWE41, ENCSR672RHL, ENCSR587DSF, 4DNFIIMZB6Y9, ENCSR410MDC

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000235023