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Basic information

CohesinDB ID: CDBG00032707

Gene Symbol: AF127577.3

Ensembl ID: ENSG00000235277

Gene locus: chr21:14918533-14947096 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0491 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,Liver,Germinal-Center-B,IMR-90,K-562,HT-1197,H1-hESC,A-549,HFF-hTERT,NaiveB,Aorta,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,H1-Mesendoderm

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, GSE120294, GSE84022, 4DNFI7H4II2V, 4DNFIBM714BP, 4DNFIV239W4L, 4DNFIE8T8JZ8, GSE52457, Direct, 4DNFIXWCLD4M, 4DNFISPUVQHA, ENCSR386KHY, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, GSE58752

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000235277