Deatailed information for gene ENSG00000235312

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  • Basic information
  • CohesinDB ID: CDBG00032734
  • Gene Symbol: KRTAP19-10P
  • Ensembl ID: ENSG00000235312
  • Gene locus: chr21:30514612-30514799 Strand: -
  • Gene type: unprocessed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0118 FDR = 0.1330
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,iPSC,CyT49-endoderm,K-562,H1-hESC,HFF-hTERT,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesendoderm,Olfactory
  • Related loop: chr21:30025000-30050000~~chr21:30500000-30525000, chr21:30250000-30275000~~chr21:30500000-30525000, chr21:30500000-30525000~~chr21:30675000-30700000, chr21:30500000-30525000~~chr21:30700000-30725000, chr21:30500000-30525000~~chr21:30800000-30825000, chr21:30500000-30525000~~chr21:31025000-31050000, chr21:30500000-30525000~~chr21:31050000-31075000, chr21:30500000-30525000~~chr21:31075000-31100000,
  • Cohesin-loop type: HiChIP,HiC
  • Cohesin-loop study: 4DNFIQYQWPF5, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFIBM714BP, 4DNFIJWBWE41, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, GSE52457, 4DNFI6XD6JAQ, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, GSE105028, 4DNFIDBIEXI7, 4DNFIVSCH2CH
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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