Deatailed information for gene ENSG00000235564
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00032895
- Gene Symbol: AP000477.2
- Ensembl ID: ENSG00000235564
-
Gene locus: chr21:23960568-23968747
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0116
FDR = 0.1399
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,NPC-H9,K-562,H1-hESC,Jurkat,GM19238,HAP1,MSLCL,NaiveB,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,HUES64,SU-DHL-4
- Related loop:
chr21:21000000-21025000~~chr21:23950000-23975000,
chr21:22775000-22800000~~chr21:23950000-23975000,
chr21:23125000-23150000~~chr21:23950000-23975000,
chr21:23130480-23132090~~chr21:23967883-23969794,
chr21:23130622-23132031~~chr21:23967933-23969495,
chr21:23400000-23425000~~chr21:23950000-23975000,
chr21:23725000-23750000~~chr21:23950000-23975000,
chr21:23850000-23875000~~chr21:23950000-23975000,
chr21:23853101-23855059~~chr21:23967784-23969703,
chr21:23853126-23855655~~chr21:23967674-23970175,
chr21:23853141-23855184~~chr21:23967552-23970117,
chr21:23853150-23855185~~chr21:23967090-23970155,
chr21:23853165-23855136~~chr21:23967703-23969775,
chr21:23853200-23855526~~chr21:23967713-23970278,
chr21:23853226-23854721~~chr21:23968041-23969577,
chr21:23853333-23855128~~chr21:23967836-23970190,
chr21:23853384-23854703~~chr21:23967950-23969661,
chr21:23853400-23854672~~chr21:23967763-23970160,
chr21:23853410-23854705~~chr21:23968015-23969702,
chr21:23935462-23937462~~chr21:23967552-23970117,
chr21:23967674-23970175~~chr21:24513395-24515016,
chr21:23968015-23969702~~chr21:24045310-24046693,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, GSE108787, GSE120294, GSE84022, ENCSR361AYD, 4DNFIREVU1Z5, ENCSR113OIR, 4DNFIYD8LO9Z, ENCSR668RDP, GSE97394, ENCSR587DSF, ENCSR452NHL, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, 4DNFIAS8LV1C, ENCSR247RGI, ENCSR338WUS, ENCSR527RXH, GSE105028
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .