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Basic information

CohesinDB ID: CDBG00032986

Gene Symbol: PCBP2P1

Ensembl ID: ENSG00000235701

Gene locus: chr21:39171129-39172106 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3152 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.466
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,DU145,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,ARPE-19,OCI-AML-3,H1-hESC,HT-1376,MSLCL,U-937,SU-DHL-4,RT-112,KBM-7,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, GSE43070, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR852KQC, GSE108787, ENCSR672RHL, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIP25GZGA, ENCSR478BMT, 4DNFIBM714BP, 4DNFIYD8LO9Z, GSE111537, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIAS8LV1C, GSE165038, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFI8Y9SRP2, GSE101921, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR110JOO, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000235701