Deatailed information for gene ENSG00000235772

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  • Basic information
  • CohesinDB ID: CDBG00033026
  • Gene Symbol: AP001625.2
  • Ensembl ID: ENSG00000235772
  • Gene locus: chr21:42560373-42561934 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2338 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.450
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,RT-112,IMR-90,K-562,H1-hESC,HCC1599,HFF-hTERT,MCF7-FASR,HeLa-S3,H9-hESC
  • Related loop: chr21:42125000-42150000~~chr21:42550000-42575000, chr21:42150000-42175000~~chr21:42550000-42575000, chr21:42300000-42325000~~chr21:42550000-42575000, chr21:42450000-42475000~~chr21:42550000-42575000, chr21:42550000-42575000~~chr21:42675000-42700000, chr21:42550000-42575000~~chr21:42800000-42825000, chr21:42550000-42575000~~chr21:43000000-43025000, chr21:42550000-42575000~~chr21:43175000-43200000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIWZEN3FF, GSE116872, 4DNFI6XD6JAQ, Direct, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, GSE118716, ENCSR852KQC, GSE155380, 4DNFIH7TH4MF, 4DNFIIMZB6Y9
  • Cohesin-loop subunit: Other,SMC1
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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