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Basic information

CohesinDB ID: CDBG00033103

Gene Symbol: AF064858.1

Ensembl ID: ENSG00000235888

Gene locus: chr21:38998650-39062894 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0175 FDR = 0.0239
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.517
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,Hep-G2,K-562,MCF-10A,TAMR-MCF7,HT-1197,H1-hESC,CC-2551,HFF-hTERT,HT-1376,HFFc6,MCF7-FASR,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,SU-DHL-4

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE118716, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE120294, 4DNFIPV5KFMK, ENCSR146FPM, 4DNFI7H4II2V, 4DNFIMEG1QIC, ENCSR668RDP, 4DNFICEGAHRC, ENCSR587DSF, ENCSR128RPG, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, ENCSR386KHY, GSE101921, 4DNFIZF1KI43, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR255XYX, 4DNFIDKJFK2S, ENCSR933UZH, GSE105028, 4DNFIDBIEXI7, 4DNFIBKZK63V

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000235888