Deatailed information for gene ENSG00000235965

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  • Basic information
  • CohesinDB ID: CDBG00033153
  • Gene Symbol: AP000431.2
  • Ensembl ID: ENSG00000235965
  • Gene locus: chr21:19046309-19047684 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.0021 FDR = 0.8016
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: H9-hESC,HeLa-S3,HEK293T
  • Related loop: chr21:18375000-18400000~~chr21:19025000-19050000, chr21:18525000-18550000~~chr21:19025000-19050000, chr21:18825000-18850000~~chr21:19025000-19050000, chr21:19025000-19050000~~chr21:19175000-19200000, chr21:19050000-19075000~~chr21:19175000-19200000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: GSE44267, 4DNFIQVMVRP6, 4DNFIWZEN3FF, 4DNFIM2BMJ33, Direct, 4DNFIE8E4ANZ, GSE105028
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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