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Basic information

CohesinDB ID: CDBG00033212

Gene Symbol: GAPDHP14

Ensembl ID: ENSG00000236056

Gene locus: chr21:29222320-29223257 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0191 FDR = 0.0136
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.786
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: GM12878,KBM-7,HFF-hTERT,HeLa-S3,hTERT-HME1,H9-hESC

Related loop: chr21:17700000-17725000~~chr21:29200000-29225000, chr21:25450000-25475000~~chr21:29225000-29250000, chr21:29075000-29100000~~chr21:29200000-29225000, chr21:29162246-29165257~~chr21:29217358-29218786, chr21:29225000-29250000~~chr21:29325000-29350000, chr21:29225000-29250000~~chr21:29350000-29375000,

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR991JXX, 4DNFIT96Z365, 4DNFIE5TEYK7, Direct, 4DNFISPUVQHA, 4DNFIBY3UHJB, GSE105028, 4DNFIDZT7PR8, 4DNFI1UEG1HD, 4DNFI7H4II2V, ENCSR410MDC

Cohesin-loop subunit: Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000236056