Deatailed information for gene ENSG00000236119

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  • Basic information
  • CohesinDB ID: CDBG00033255
  • Gene Symbol: AP000688.3
  • Ensembl ID: ENSG00000236119
  • Gene locus: chr21:36082858-36090414 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0260 FDR = 0.0007
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,K-562,H1-hESC,HFF-hTERT,HeLa-S3
  • Related loop: chr21:34325000-34350000~~chr21:36075000-36100000, chr21:34350000-34375000~~chr21:36075000-36100000, chr21:35950000-35975000~~chr21:36075000-36100000, chr21:36075000-36100000~~chr21:36175000-36200000, chr21:36075000-36100000~~chr21:38250000-38275000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFIBM714BP, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, Direct, 4DNFITUOMFUQ, 4DNFI1UEG1HD, 4DNFIBXWIH8J, ENCSR545YBD, ENCSR410MDC
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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