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Basic information

CohesinDB ID: CDBG00033394

Gene Symbol: AP001604.1

Ensembl ID: ENSG00000236332

Gene locus: chr21:27361163-27395787 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1847 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.965
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: K-562,MB157,HT-1197,H1-hESC,HCC1599,HFF-hTERT,HAP1,HFFc6,HeLa-S3,hTERT-HME1,H9-hESC

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIE8T8JZ8, ENCSR991JXX, 4DNFIQVMVRP6, 4DNFI3A3VYWU, GSE116872, Direct, 4DNFISPUVQHA, GSE105028, ENCSR386KHY, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, 4DNFIHN2QSMX, GSE116869, 4DNFIZ4F74QR, 4DNFI7H4II2V

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000236332