Deatailed information for gene ENSG00000236382

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  • Basic information
  • CohesinDB ID: CDBG00033429
  • Gene Symbol: KRTAP10-13P
  • Ensembl ID: ENSG00000236382
  • Gene locus: chr21:44702220-44702791 Strand: +
  • Gene type: unprocessed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0049 FDR = 0.5416
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,iPSC,GM12878,IMR-90,K-562,H1-hESC,HeLa-S3,U-937,H9-hESC,HUES64
  • Related loop: chr21:43575000-43600000~~chr21:44675000-44700000, chr21:44175000-44200000~~chr21:44700000-44725000, chr21:44250000-44275000~~chr21:44675000-44700000, chr21:44325000-44350000~~chr21:44700000-44725000, chr21:44500000-44525000~~chr21:44700000-44725000, chr21:44575000-44600000~~chr21:44675000-44700000, chr21:44700000-44725000~~chr21:44925000-44950000, chr21:44707178-44708406~~chr21:44792109-44794449,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFISTWNV9C, 4DNFI5LCW273, 4DNFIM2BMJ33, Direct, GSE165038, GSE118716, GSE105028, 4DNFIDBIEXI7, GSE120294, ENCSR852KQC, 4DNFIH7TH4MF, GSE97394, ENCSR587DSF, ENCSR410MDC
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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