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Basic information

CohesinDB ID: CDBG00033497

Gene Symbol: AF127577.5

Ensembl ID: ENSG00000236471

Gene locus: chr21:15067069-15067837 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1748 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.755
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MB157,DU145,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,GM19239,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,ARPE-19,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, ENCSR194SRI, GSE94872, 4DNFIMROE6N4, ENCSR499RVD, 4DNFI5SUHCGZ, GSE120294, 4DNFIPV5KFMK, ENCSR146FPM, ENCSR672RHL, GSE103148, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR866FWQ, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIREVU1Z5, ENCSR113OIR, 4DNFI9VXTBE2, 4DNFIRKGMZRQ, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR587DSF, ENCSR752QCX, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFI9YAVTI1, GSE80820, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFIAS8LV1C, 4DNFISPUVQHA, ENCSR386KHY, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, ENCSR393LOP, ENCSR991JXX, 4DNFIC3HAU11, ENCSR305RTT, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, ENCSR527RXH, ENCSR933UZH, ENCSR833CMG, 4DNFIFLJLIS5, GSE105028, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000236471