Deatailed information for gene ENSG00000236545
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00033558
- Gene Symbol: AP001619.2
- Ensembl ID: ENSG00000236545
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Gene locus: chr21:41870632-41872054
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1806
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.477
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,Germinal-Center-B,NPC-H9,K-562,RT-112,MB157,H1-hESC,A-549,HFF-hTERT,HAP1,MCF7-FASR,Motor-Neuron,HeLa-S3,H9-hESC,Olfactory,SU-DHL-4
- Related loop:
chr21:41350000-41375000~~chr21:41850000-41875000,
chr21:41600000-41625000~~chr21:41850000-41875000,
chr21:41750000-41775000~~chr21:41850000-41875000,
chr21:41815741-41818325~~chr21:41876469-41879286,
chr21:41832160-41834589~~chr21:41867750-41870564,
chr21:41832160-41834589~~chr21:41876469-41879286,
chr21:41850000-41875000~~chr21:41950000-41975000,
chr21:41850000-41875000~~chr21:42050000-42075000,
chr21:41850000-41875000~~chr21:42075000-42100000,
chr21:41850000-41875000~~chr21:42100000-42125000,
chr21:41850000-41875000~~chr21:42225000-42250000,
chr21:41850000-41875000~~chr21:42275000-42300000,
chr21:41872516-41873998~~chr21:42116737-42118378,
chr21:41875000-41900000~~chr21:41975000-42000000,
chr21:41875000-41900000~~chr21:42000000-42025000,
chr21:41875000-41900000~~chr21:42100000-42125000,
chr21:41876408-41880502~~chr21:42116480-42118891,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, 4DNFIWZEN3FF, 4DNFIBRSIPE4, GSE118716, 4DNFIE8E4ANZ, 4DNFIBN9K4V9, GSE84022, 4DNFIPV5KFMK, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIREVU1Z5, GSE155380, ENCSR981FNA, 4DNFI9YAVTI1, 4DNFIBT4EAKN, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFIBY3UHJB, ENCSR244BBG, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, GSE116869
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .