Deatailed information for gene ENSG00000236677
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00033638
- Gene Symbol: SETD4-AS1
- Ensembl ID: ENSG00000236677
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Gene locus: chr21:36060431-36064408
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1224
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: NCI-H1437,GM12891,H9-endodermal,GM12878,HCT-116,Hep-G2,HT-1197,H1-hESC,HT-1376,HFF-hTERT,HAP1,PAEC,K1
- Related loop:
chr21:34350000-34375000~~chr21:36050000-36075000,
chr21:36050000-36075000~~chr21:36200000-36225000,
chr21:36058447-36061428~~chr21:36111897-36113834,
chr21:36059236-36061877~~chr21:36111989-36114651,
chr21:36059285-36061312~~chr21:36104007-36105819,
chr21:36059285-36061312~~chr21:36112056-36113996,
chr21:36059311-36061185~~chr21:36103004-36105170,
chr21:36059311-36061185~~chr21:36112033-36114031,
chr21:36059312-36061200~~chr21:36104038-36105851,
chr21:36059347-36061711~~chr21:36102970-36104752,
chr21:36059348-36061289~~chr21:36103921-36105755,
chr21:36059348-36061289~~chr21:36112009-36113920,
chr21:36059365-36061258~~chr21:36112039-36113944,
chr21:36059394-36061226~~chr21:36112056-36114424,
chr21:36059613-36061297~~chr21:36103944-36105869,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR123UVP, 4DNFI9YAVTI1, GSE95015, ENCSR478BMT, ENCSR299VMZ, ENCSR314HAC, Direct, ENCSR668RDP, ENCSR933UZH, ENCSR833CMG, ENCSR386KHY, 4DNFI6JJQKFJ, 4DNFIP71EWXC, 4DNFISPUVQHA, 4DNFICSTCJQZ, ENCSR981FNA, 4DNFIYD8LO9Z, ENCSR587DSF, 4DNFIIMZB6Y9, ENCSR410MDC
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .