Deatailed information for gene ENSG00000236830
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00033742
- Gene Symbol: CBR3-AS1
- Ensembl ID: ENSG00000236830
-
Gene locus: chr21:36132799-36175815
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.2102
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.417
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,H1-Mesenchymal,Olfactory,Hepatocyte-H9,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,H1-hESC,HT-1376,GM19238,Motor-Neuron,MSLCL,NaiveB,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:27500000-27525000~~chr21:36125000-36150000,
chr21:34350000-34375000~~chr21:36125000-36150000,
chr21:36075000-36100000~~chr21:36175000-36200000,
chr21:36122381-36123542~~chr21:36140871-36142703,
chr21:36122898-36124126~~chr21:36134610-36136702,
chr21:36125000-36150000~~chr21:36225000-36250000,
chr21:36125000-36150000~~chr21:36300000-36325000,
chr21:36125000-36150000~~chr21:36325000-36350000,
chr21:36125000-36150000~~chr21:36350000-36375000,
chr21:36125000-36150000~~chr21:36375000-36400000,
chr21:36125000-36150000~~chr21:36500000-36525000,
chr21:36125000-36150000~~chr21:36575000-36600000,
chr21:36125000-36150000~~chr21:36625000-36650000,
chr21:36125000-36150000~~chr21:36675000-36700000,
chr21:36125000-36150000~~chr21:36900000-36925000,
chr21:36125000-36150000~~chr21:36925000-36950000,
chr21:36125000-36150000~~chr21:38150000-38175000,
chr21:36125000-36150000~~chr21:38325000-38350000,
chr21:36125000-36150000~~chr21:38350000-38375000,
chr21:36140628-36142797~~chr21:36208896-36211059,
chr21:36140628-36142797~~chr21:36329784-36332238,
chr21:36140628-36142797~~chr21:36388297-36390535,
chr21:36140648-36142704~~chr21:36389208-36390546,
chr21:36140770-36142598~~chr21:36208928-36210883,
chr21:36140783-36142792~~chr21:36329776-36331881,
chr21:36140783-36142792~~chr21:36388547-36390538,
chr21:36140789-36142775~~chr21:36208898-36210957,
chr21:36140789-36142775~~chr21:36329509-36332676,
chr21:36140792-36142611~~chr21:36208845-36210808,
chr21:36140792-36142611~~chr21:36330014-36331898,
chr21:36140799-36142667~~chr21:36329820-36331841,
chr21:36140799-36142837~~chr21:36208339-36210839,
chr21:36140799-36142837~~chr21:36329790-36332543,
chr21:36140808-36142792~~chr21:36208893-36211062,
chr21:36140808-36142792~~chr21:36389186-36390767,
chr21:36140808-36142792~~chr21:36419122-36421037,
chr21:36140818-36142825~~chr21:36208180-36210735,
chr21:36140822-36142823~~chr21:36208825-36210883,
chr21:36140822-36142823~~chr21:36329998-36331844,
chr21:36140824-36142795~~chr21:36208849-36210862,
chr21:36140824-36142795~~chr21:36329821-36332549,
chr21:36140824-36142795~~chr21:36389196-36390710,
chr21:36140824-36142795~~chr21:36419273-36421104,
chr21:36140828-36142593~~chr21:36208784-36210767,
chr21:36140829-36142646~~chr21:36389162-36390561,
chr21:36140830-36142847~~chr21:36329991-36331896,
chr21:36140830-36142847~~chr21:36389185-36390513,
chr21:36140835-36142753~~chr21:36388314-36390557,
chr21:36140836-36142645~~chr21:36208979-36210847,
chr21:36140837-36142525~~chr21:36208955-36210590,
chr21:36140837-36142525~~chr21:36330185-36331807,
chr21:36140837-36142525~~chr21:36389208-36390500,
chr21:36140838-36142714~~chr21:36208696-36210781,
chr21:36140838-36142724~~chr21:36330105-36331857,
chr21:36140838-36142786~~chr21:36208808-36211018,
chr21:36140838-36142786~~chr21:36329955-36332030,
chr21:36140838-36142786~~chr21:36388412-36390522,
chr21:36140843-36142531~~chr21:36208942-36210568,
chr21:36140848-36142815~~chr21:36208865-36210865,
chr21:36140848-36142815~~chr21:36329998-36332133,
chr21:36140849-36142584~~chr21:36208920-36210789,
chr21:36140850-36142837~~chr21:36208890-36210845,
chr21:36140850-36142837~~chr21:36329788-36331839,
chr21:36140851-36142527~~chr21:36330219-36331784,
chr21:36140852-36142557~~chr21:36208778-36210979,
chr21:36140852-36142574~~chr21:36330027-36331746,
chr21:36140857-36142570~~chr21:36330220-36331778,
chr21:36140862-36142780~~chr21:36208188-36210796,
chr21:36140863-36142602~~chr21:36208770-36210834,
chr21:36140866-36142633~~chr21:36208896-36210832,
chr21:36140866-36142633~~chr21:36330006-36331764,
chr21:36140870-36142745~~chr21:36209005-36210744,
chr21:36140870-36142745~~chr21:36330021-36331732,
chr21:36140871-36142703~~chr21:36208897-36210863,
chr21:36140871-36142703~~chr21:36330000-36331880,
chr21:36140877-36142726~~chr21:36330374-36331962,
chr21:36140896-36142511~~chr21:36330240-36331785,
chr21:36150000-36175000~~chr21:36300000-36325000,
chr21:36150000-36175000~~chr21:36325000-36350000,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:46175000-46200000,
chr21:36152011-36154258~~chr21:36208885-36210840,
chr21:36152011-36154258~~chr21:36329911-36331790,
chr21:36152043-36154290~~chr21:36208880-36210854,
chr21:36152093-36154114~~chr21:36208893-36211062,
chr21:36152093-36154114~~chr21:36329968-36331810,
chr21:36152185-36154228~~chr21:36208896-36210870,
chr21:36152185-36154228~~chr21:36330105-36331857,
chr21:36152191-36154260~~chr21:36208896-36210832,
chr21:36152213-36154154~~chr21:36208928-36210883,
chr21:36152221-36154080~~chr21:36208180-36210735,
chr21:36152221-36154286~~chr21:36388878-36390620,
chr21:36152227-36154127~~chr21:36208825-36210883,
chr21:36152227-36154127~~chr21:36329998-36331844,
chr21:36152242-36154206~~chr21:36208896-36211059,
chr21:36152242-36154206~~chr21:36329784-36332238,
chr21:36152248-36154218~~chr21:36329821-36332549,
chr21:36152248-36154218~~chr21:36389196-36390710,
chr21:36152248-36154241~~chr21:36187568-36189319,
chr21:36152248-36154241~~chr21:36208696-36210781,
chr21:36152259-36154196~~chr21:36208897-36210863,
chr21:36152272-36154246~~chr21:36208777-36210982,
chr21:36152272-36154246~~chr21:36329803-36332227,
chr21:36152278-36154206~~chr21:36329776-36331881,
chr21:36152287-36154113~~chr21:36330219-36331784,
chr21:36152322-36154109~~chr21:36208843-36210788,
chr21:36152382-36154180~~chr21:36208778-36210979,
chr21:36152382-36154180~~chr21:36330054-36331815,
chr21:36152388-36154122~~chr21:36329820-36331841,
chr21:36152395-36154141~~chr21:36208770-36210834,
chr21:36152396-36154049~~chr21:36208182-36211280,
chr21:36152411-36154050~~chr21:36330018-36331884,
chr21:36152478-36153914~~chr21:36329788-36331839,
chr21:36152486-36154104~~chr21:36208903-36211039,
chr21:36152494-36154153~~chr21:36208813-36210759,
chr21:36152499-36154054~~chr21:36329509-36332676,
chr21:36152513-36154017~~chr21:36208784-36210767,
chr21:36152523-36154340~~chr21:36330014-36331898,
chr21:36155171-36156841~~chr21:36208778-36210979,
chr21:36155462-36156722~~chr21:36208903-36211039,
chr21:36155654-36157667~~chr21:36208890-36210845,
chr21:36155654-36157667~~chr21:36259462-36261497,
chr21:36175000-36200000~~chr21:36350000-36375000,
chr21:36175000-36200000~~chr21:36575000-36600000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE108869, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, ENCSR146FPM, 4DNFIOX3BGNE, ENCSR478BMT, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, 4DNFIFHU75I5, ENCSR123UVP, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, GSE111537, ENCSR381DCY, ENCSR981FNA, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIQVMVRP6, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .