Deatailed information for gene ENSG00000237138

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00033947
  • Gene Symbol: HUNK-AS1
  • Ensembl ID: ENSG00000237138
  • Gene locus: chr21:32020965-32021782 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0163 FDR = 0.0363
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.943
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,iPSC,TAMR-MCF7,H1-hESC,HFFc6,MCF7-FASR,HeLa-S3
  • Related loop: chr21:27500000-27525000~~chr21:32000000-32025000, chr21:32000000-32025000~~chr21:32250000-32275000, chr21:32025000-32050000~~chr21:32175000-32200000, chr21:32025000-32050000~~chr21:32225000-32250000, chr21:32025000-32050000~~chr21:32450000-32475000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIQYQWPF5, 4DNFI5LCW273, 4DNFI6XD6JAQ, Direct, 4DNFIMROE6N4, GSE118716, 4DNFIFLJLIS5, 4DNFICEGAHRC, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFI8JFOAJT, 4DNFIIMZB6Y9, 4DNFIVSCH2CH
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene