Deatailed information for gene ENSG00000237232
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034009
- Gene Symbol: ZNF295-AS1
- Ensembl ID: ENSG00000237232
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Gene locus: chr21:42009493-42055112
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3235
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.813
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MB157,DU145,Olfactory,Hepatocyte-H9,MCF-7,SARS-Cov2-olfactory,GM12878,HFFc6,HeLa-S3,SU-DHL-2,KU-19-19,H9-hESC,Germinal-Center-B,H1-hESC,HT-1376,SU-DHL-4,HUVEC,NPC-H9,CyT49-endoderm,RT-112,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:41600000-41625000~~chr21:42050000-42075000,
chr21:41609800-41611357~~chr21:42049201-42050517,
chr21:41850000-41875000~~chr21:42050000-42075000,
chr21:41875000-41900000~~chr21:42000000-42025000,
chr21:41877545-41880451~~chr21:42008763-42011946,
chr21:41952495-41953705~~chr21:42008731-42011959,
chr21:41957072-41959223~~chr21:42008838-42011899,
chr21:41957418-41959149~~chr21:42008452-42012075,
chr21:42000000-42025000~~chr21:42100000-42125000,
chr21:42008409-42012026~~chr21:42106683-42108941,
chr21:42008452-42012075~~chr21:42106648-42108930,
chr21:42008727-42012041~~chr21:42106936-42108928,
chr21:42008728-42012071~~chr21:42106883-42109087,
chr21:42008730-42010862~~chr21:42116718-42118814,
chr21:42008738-42010602~~chr21:42116725-42118988,
chr21:42008738-42011645~~chr21:42106897-42108988,
chr21:42008738-42011645~~chr21:42116715-42119049,
chr21:42008738-42012043~~chr21:42106900-42108919,
chr21:42008744-42011714~~chr21:42060877-42064978,
chr21:42008744-42011714~~chr21:42106670-42109262,
chr21:42008744-42011714~~chr21:42116454-42119047,
chr21:42025000-42050000~~chr21:42775000-42800000,
chr21:42050000-42075000~~chr21:42525000-42550000,
chr21:42050000-42075000~~chr21:42975000-43000000,
chr21:42050000-42075000~~chr21:43350000-43375000,
chr21:42050000-42075000~~chr21:44250000-44275000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, 4DNFIWZEN3FF, GSE43070, GSE94872, 4DNFIMROE6N4, GSE118716, GSE108787, GSE116869, 4DNFI5SUHCGZ, GSE84022, 4DNFIDSWKFF5, ENCSR672RHL, ENCSR410MDC, 4DNFIF2D3TL9, 4DNFIREVU1Z5, 4DNFIFHU75I5, 4DNFIRKGMZRQ, GSE99541, ENCSR381DCY, GSE155380, ENCSR981FNA, ENCSR587DSF, ENCSR128RPG, 4DNFISTWNV9C, ENCSR658RQQ, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIC3HAU11, ENCSR404HWQ, ENCSR247RGI, ENCSR933UZH, GSE105028, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .