Deatailed information for gene ENSG00000237338
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034089
- Gene Symbol: FTCD-AS1
- Ensembl ID: ENSG00000237338
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Gene locus: chr21:46151613-46152647
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1072
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.703
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: NPC-H9,K-562,TAMR-MCF7,MB157,H1-hESC,HCC1599,HFF-hTERT,HAP1,Motor-Neuron,SU-DHL-2,H9-hESC,SU-DHL-4
- Related loop:
chr21:40475000-40500000~~chr21:46125000-46150000,
chr21:45725000-45750000~~chr21:46125000-46150000,
chr21:45950000-45975000~~chr21:46125000-46150000,
chr21:45969912-45971939~~chr21:46146852-46148242,
chr21:45975000-46000000~~chr21:46125000-46150000,
chr21:46025000-46050000~~chr21:46125000-46150000,
chr21:46146626-46148368~~chr21:46324586-46327028,
chr21:46146642-46148386~~chr21:46324608-46326836,
chr21:46146852-46148242~~chr21:46209838-46211680,
chr21:46152443-46154288~~chr21:46209880-46211539,
chr21:46152495-46154271~~chr21:46639226-46640751,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI1E6NJQJ, ENCSR128RPG, 4DNFIBT4EAKN, 4DNFIPAF4PYT, ENCSR658RQQ, ENCSR247RGI, ENCSR338WUS, GSE116872, Direct, GSE118716, GSE105028, ENCSR794RDS, GSE116869, GSE120294, 4DNFIPV5KFMK, ENCSR587DSF
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .