Deatailed information for gene ENSG00000237373

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  • Basic information
  • CohesinDB ID: CDBG00034114
  • Gene Symbol: BRWD1-IT1
  • Ensembl ID: ENSG00000237373
  • Gene locus: chr21:39217092-39219805 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1178 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.959
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,Liver,GM12878,K-562,TAMR-MCF7,H1-hESC,HFF-hTERT,MCF7-FASR,H9-hESC
  • Related loop: chr21:39200000-39225000~~chr21:39300000-39325000, chr21:39200000-39225000~~chr21:39375000-39400000, chr21:39200000-39225000~~chr21:39400000-39425000, chr21:39200000-39225000~~chr21:39425000-39450000, chr21:39200000-39225000~~chr21:39600000-39625000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIPAF4PYT, 4DNFIBRSIPE4, 4DNFI6XD6JAQ, Direct, GSE118716, 4DNFISPUVQHA, GSE105028, GSE108787, 4DNFIDBIEXI7, GSE58752
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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