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Basic information

CohesinDB ID: CDBG00034165

Gene Symbol: AP001342.1

Ensembl ID: ENSG00000237444

Gene locus: chr21:25031004-25031529 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1689 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.976
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: iPSC,REC-1,GM12878,CyT49-endoderm,MB157,H1-hESC,HCC1599,HAP1,HFFc6,H9-hESC,HUES64

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: GSE95015, GSE116875, 4DNFI5CGQ46V, 4DNFI5SUHCGZ, GSE120294, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIYD8LO9Z, GSE97394, 4DNFIIMZB6Y9, GSE80820, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI3A3VYWU, Direct, 4DNFIYDBBSE3, GSE116872, 4DNFIOCW5AEM, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIFLJLIS5, GSE105028, GSE116869, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000237444