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Basic information

CohesinDB ID: CDBG00034224

Gene Symbol: AF241725.1

Ensembl ID: ENSG00000237527

Gene locus: chr21:21655037-21686329 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0974 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,IMR-90,Olfactory,Hepatocyte-H9,MCF-7,K-562,HFFc6,HeLa-S3,LNCaP,SU-DHL-2,KU-19-19,H9-hESC,REC-1,HT-1197,H1-hESC,GM19238,MSLCL,HUES64,SU-DHL-4,CyT49-hESC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, GSE116875, 4DNFIR8OU6QJ, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, GSE120294, 4DNFI6EIFUZI, ENCSR478BMT, ENCSR732QOH, ENCSR113OIR, 4DNFIA6NSSBJ, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE99541, ENCSR381DCY, 4DNFIJWBWE41, GSE97394, 4DNFICEGAHRC, ENCSR587DSF, ENCSR452NHL, 4DNFIE8T8JZ8, 4DNFIIMZB6Y9, ENCSR128RPG, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, 4DNFISPUVQHA, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR404HWQ, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000237527