Deatailed information for gene ENSG00000237594

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00034269
  • Gene Symbol: AP000251.1
  • Ensembl ID: ENSG00000237594
  • Gene locus: chr21:31559244-31560487 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0324 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.676
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,RT-112,Hep-G2,MCF-10A,TAMR-MCF7,MB157,A-549,CC-2551,HFF-hTERT,HT-1376,H9-hESC,SU-DHL-4,HUVEC
  • Related loop: chr21:31175000-31200000~~chr21:31550000-31575000, chr21:31197753-31199935~~chr21:31565273-31566860, chr21:31200000-31225000~~chr21:31550000-31575000, chr21:31325000-31350000~~chr21:31550000-31575000, chr21:31343102-31344948~~chr21:31557869-31560689, chr21:31350000-31375000~~chr21:31550000-31575000, chr21:31450000-31475000~~chr21:31550000-31575000,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFIMEG1QIC, ENCSR662QKG, 4DNFI9ZWZ5BS, ENCSR658RQQ, ENCSR194SRI, 4DNFI6CWNUFL, Direct, GSE94872, GSE118716, ENCSR933UZH, GSE116869, GSE120294, GSE101921, GSE155380, 4DNFICSTCJQZ, ENCSR244BBG
  • Cohesin-loop subunit: SMC1,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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