Deatailed information for gene ENSG00000237731
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034363
- Gene Symbol: RNGTTP1
- Ensembl ID: ENSG00000237731
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Gene locus: chr21:25643488-25644216
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.2996
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.596
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12878,K-562,MCF-10A,HT-1376,Motor-Neuron,HFF-hTERT,HAP1,SU-DHL-2,hTERT-HME1,SU-DHL-4,Hepatocyte-H9
- Related loop:
chr21:25606733-25609495~~chr21:25639158-25640825,
chr21:25606735-25609548~~chr21:25638240-25641048,
chr21:25606790-25609462~~chr21:25639349-25640533,
chr21:25606798-25609451~~chr21:25639345-25640775,
chr21:25606813-25609564~~chr21:25639067-25640965,
chr21:25606899-25609820~~chr21:25639037-25640766,
chr21:25625000-25650000~~chr21:25725000-25750000,
chr21:25625000-25650000~~chr21:25775000-25800000,
chr21:25625000-25650000~~chr21:26150000-26175000,
chr21:25625000-25650000~~chr21:26825000-26850000,
chr21:25625000-25650000~~chr21:28050000-28075000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR991JXX, 4DNFI8649RQJ, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, ENCSR933UZH, ENCSR381DCY, 4DNFIDBIEXI7, ENCSR094EIC, GSE101921, ENCSR981FNA
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .