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Basic information

CohesinDB ID: CDBG00034506

Gene Symbol: LINC00649

Ensembl ID: ENSG00000237945

Gene locus: chr21:33948787-33969598 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1414 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.467
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,H1-Mesenchymal,Olfactory,MCF-7,HEK293T,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,Kelly,H1-hESC,Motor-Neuron,MSLCL,HUVEC,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, GSE43070, 4DNFI5CGQ46V, GSE94872, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE126792, ENCSR350NJV, 4DNFIBM714BP, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR981FNA, ENCSR587DSF, ENCSR452NHL, 4DNFIOUSETUP, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIX7H3CE2, GSE101921, 4DNFIK61ILGM, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFINEQY95T, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000237945