Deatailed information for gene ENSG00000238141
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034647
- Gene Symbol: BRWD1-AS1
- Ensembl ID: ENSG00000238141
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Gene locus: chr21:39315706-39323218
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1588
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.933
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,GM12892,Hepatocyte-H9,MCF-7,GM12891,GM12878,K-562,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,NCI-H1437,HT-1197,H1-hESC,HT-1376,MSLCL,SU-DHL-4,Skin-Fibroblast,HFF-hTERT,HAP1
- Related loop:
chr21:38800000-38825000~~chr21:39325000-39350000,
chr21:39200000-39225000~~chr21:39300000-39325000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39300000-39325000~~chr21:39600000-39625000,
chr21:39300000-39325000~~chr21:39700000-39725000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39347346-39350688,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39347651-39350715,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39347106-39349452,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39347655-39350638,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39347557-39350333,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,
chr21:39320997-39322719~~chr21:39347655-39350638,
chr21:39325000-39350000~~chr21:39425000-39450000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, 4DNFIHMCILEN, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFIW8TIFI5, ENCSR732QOH, 4DNFIBM714BP, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, ENCSR386KHY, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR255XYX, ENCSR000FDB, ENCSR338WUS, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR833CMG, 4DNFIDBIEXI7, GSE105028, ENCSR033GUP
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .