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Basic information

CohesinDB ID: CDBG00034686

Gene Symbol: PAXBP1-AS1

Ensembl ID: ENSG00000238197

Gene locus: chr21:32728599-32746781 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.4846 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.379
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HL-60,iPSC,GM12878,IMR-90,TAMR-MCF7,HT-1197,H1-hESC,A-549,CC-2551,HAP1,HFF-hTERT,HFFc6,HeLa-S3,H9-hESC,H1-Mesenchymal,Olfactory,Hepatocyte-H9

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR662QKG, GSE95015, 4DNFIMROE6N4, GSE118716, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR852KQC, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFII6AN691, 4DNFIYD8LO9Z, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFICEGAHRC, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI6JJQKFJ, GSE108869, ENCSR244BBG, ENCSR393LOP, 4DNFI5LCW273, 4DNFIFI6NIKJ, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000238197