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Basic information

CohesinDB ID: CDBG00034699

Gene Symbol: AP000275.1

Ensembl ID: ENSG00000238220

Gene locus: chr21:32624415-32625096 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0710 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,Liver,GM12878,IMR-90,K-562,MCF-10A,TAMR-MCF7,KBM-7,H1-hESC,A-549,HFF-hTERT,HAP1,HFFc6,Motor-Neuron,U251,HeLa-S3,H9-hESC,H1-Mesenchymal

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIBM714BP, 4DNFIV239W4L, GSE80820, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, 4DNFIM2BMJ33, Direct, 4DNFIH9U4I7I, 4DNFIBY3UHJB, 4DNFISPUVQHA, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, GSE108869, GSE125243, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR305RTT, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE105028, 4DNFIZGCA8AH, GSE58752, 4DNFII84FBKM, 4DNFIT96Z365

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000238220