Deatailed information for gene ENSG00000238265
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034730
- Gene Symbol: LINC00317
- Ensembl ID: ENSG00000238265
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Gene locus: chr21:21723292-21737319
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0595
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,H1-hESC,HFF-hTERT,HFFc6,H1-Trophectoderm,H9-hESC
- Related loop:
chr21:14975000-15000000~~chr21:21700000-21725000,
chr21:21175000-21200000~~chr21:21700000-21725000,
chr21:21700000-21725000~~chr21:21900000-21925000,
chr21:21700000-21725000~~chr21:22100000-22125000,
chr21:21700000-21725000~~chr21:25350000-25375000,
chr21:21725000-21750000~~chr21:21925000-21950000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIE8T8JZ8, 4DNFI8649RQJ, GSE52457, 4DNFIBM714BP, Direct, 4DNFIMROE6N4, GSE105028, GSE108787, 4DNFI5SUHCGZ, GSE120294, 4DNFIW8TIFI5
- Cohesin-loop subunit: Other,SMC1
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .