Deatailed information for gene ENSG00000238390

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  • Basic information
  • CohesinDB ID: CDBG00034780
  • Gene Symbol: AP000254.1
  • Ensembl ID: ENSG00000238390
  • Gene locus: chr21:31664305-31664482 Strand: +
  • Gene type: snoRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3815 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.333
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: SU-DHL-2,SU-DHL-4,GM12878,H1-hESC
  • Related loop: chr21:27500000-27525000~~chr21:31650000-31675000, chr21:31622545-31624738~~chr21:31658893-31661227, chr21:31622573-31624872~~chr21:31665039-31666300, chr21:31622928-31624476~~chr21:31665036-31666246, chr21:31647206-31648984~~chr21:31658893-31661227, chr21:31650000-31675000~~chr21:39175000-39200000,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: ENCSR128RPG, 4DNFIQYQWPF5, ENCSR658RQQ, Direct, ENCSR981FNA, 4DNFIIMZB6Y9, ENCSR410MDC
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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