Deatailed information for gene ENSG00000238627
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00034841
- Gene Symbol: RNA5SP489
- Ensembl ID: ENSG00000238627
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Gene locus: chr21:25202206-25202315
Strand: +
- Gene type: rRNA_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0086
FDR = 0.2753
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HFF-hTERT,GM12878
- Related loop:
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:25000000-25025000~~chr21:25200000-25225000,
chr21:25025000-25050000~~chr21:25175000-25200000,
chr21:25175000-25200000~~chr21:25300000-25325000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25475000-25500000,
chr21:25175000-25200000~~chr21:25550000-25575000,
chr21:25200000-25225000~~chr21:38225000-38250000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI9YAVTI1, 4DNFI9ZWZ5BS, 4DNFI5CGQ46V, Direct, 4DNFISPUVQHA, 4DNFI1UEG1HD, GSE80820, ENCSR410MDC
- Cohesin-loop subunit: Other,SMC1
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .