Deatailed information for gene ENSG00000240770
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00035648
- Gene Symbol: C21orf91-OT1
- Ensembl ID: ENSG00000240770
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Gene locus: chr21:17763314-17792523
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0507
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.964
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,GM12878,RT-112,K-562,H1-hESC,A-549,HFF-hTERT,NaiveB,HeLa-S3,H9-hESC,H1-Mesenchymal,HUES64
- Related loop:
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:14375000-14400000~~chr21:17775000-17800000,
chr21:15025000-15050000~~chr21:17775000-17800000,
chr21:15725000-15750000~~chr21:17775000-17800000,
chr21:17350000-17375000~~chr21:17775000-17800000,
chr21:17375000-17400000~~chr21:17775000-17800000,
chr21:17425000-17450000~~chr21:17775000-17800000,
chr21:17650000-17675000~~chr21:17750000-17775000,
chr21:17650000-17675000~~chr21:17775000-17800000,
chr21:17675000-17700000~~chr21:17775000-17800000,
chr21:17750000-17775000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:17900000-17925000,
chr21:17775000-17800000~~chr21:18100000-18125000,
chr21:17775000-17800000~~chr21:18875000-18900000,
chr21:17775000-17800000~~chr21:23825000-23850000,
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:17775000-17800000~~chr21:25450000-25475000,
chr21:17775000-17800000~~chr21:25725000-25750000,
chr21:17775000-17800000~~chr21:29000000-29025000,
chr21:17775000-17800000~~chr21:38225000-38250000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE44267, 4DNFI8649RQJ, GSE52457, 4DNFIWZEN3FF, Direct, 4DNFIDJ2JZ7Q, 4DNFIFI6NIKJ, 4DNFIXWCLD4M, GSE105028, GSE108787, 4DNFIDBIEXI7, 4DNFI1UEG1HD, GSE120294, GSE155380, GSE84022, ENCSR244BBG, GSE97394, 4DNFIW8TIFI5, GSE80820, ENCSR410MDC
- Cohesin-loop subunit: Rad21,Other,SMC1
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .