Deatailed information for gene ENSG00000241837
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00036078
- Gene Symbol: ATP5PO
- Ensembl ID: ENSG00000241837
-
Gene locus: chr21:33903452-33915804
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs
- Regulatory cohesin (double-evidenced):
chr21-32824831-32828372,
chr21-32830402-32830634,
chr21-32831636-32833765,
chr21-32834854-32835342,
chr21-32836285-32836542,
chr21-32844499-32845578,
chr21-32846527-32846785,
chr21-33195338-33206151,
chr21-33206645-33209519,
chr21-33209798-33210131,
chr21-33211272-33213452,
chr21-33215011-33217335,
chr21-33219732-33220309,
chr21-33222873-33223242,
chr21-33224686-33226597,
chr21-33227306-33234986,
chr21-33235935-33240451,
chr21-33241032-33241987,
chr21-33242428-33243401,
chr21-33243836-33246483,
chr21-33246774-33247187,
chr21-33247456-33248264,
chr21-33248634-33250562,
chr21-33372144-33385560,
chr21-33385830-33386823,
chr21-33387293-33390415,
chr21-33390737-33395496,
chr21-33395831-33399196,
chr21-33399401-33399800,
chr21-33549851-33553567,
chr21-33555465-33555687,
chr21-33557350-33557775,
chr21-33559351-33559571,
chr21-33559859-33560148,
chr21-33562137-33563192,
chr21-33564641-33564857,
chr21-33569523-33570179,
chr21-33572330-33572767,
chr21-33575130-33575357,
chr21-33576200-33577811,
chr21-33578038-33578662,
chr21-33578902-33581040,
chr21-33582725-33583211,
chr21-33586625-33587297,
chr21-33587732-33589857,
chr21-33590147-33590694,
chr21-33593036-33593355,
chr21-33597497-33597919,
chr21-33600574-33601299,
chr21-33603909-33604583,
chr21-33605200-33607038,
chr21-33607346-33608402,
chr21-33608659-33608932,
chr21-33609731-33610466,
chr21-33610749-33611018,
chr21-33612271-33612631,
chr21-33616311-33616612,
chr21-33617012-33618282,
chr21-33620585-33621673,
chr21-33622979-33623244,
chr21-33624861-33625767,
chr21-33627734-33628081,
chr21-33628806-33629574,
chr21-33632120-33632780,
chr21-33633469-33634006,
chr21-33634256-33634599,
chr21-33635325-33635974,
chr21-33637118-33637484,
chr21-33638225-33638513,
chr21-33640656-33646119,
chr21-33647554-33647858,
chr21-33648739-33649349,
chr21-33649579-33650417,
chr21-33650978-33651235,
chr21-33651536-33652410,
chr21-33653529-33653858,
chr21-33655194-33657906,
chr21-33658984-33659271,
chr21-33659609-33660867,
chr21-33663336-33664612,
chr21-33664985-33665203,
chr21-33665960-33666559,
chr21-33667923-33669661,
chr21-33671346-33671816,
chr21-33675259-33675593,
chr21-33678520-33679233,
chr21-33681669-33681950,
chr21-33682198-33684451,
chr21-33684696-33686775,
chr21-33687051-33688043,
chr21-33688329-33690064,
chr21-33690301-33691242,
chr21-33692275-33692558,
chr21-33693364-33693628,
chr21-33695730-33696319,
chr21-33700016-33700294,
chr21-33700936-33701037,
chr21-33701558-33702121,
chr21-33703645-33704316,
chr21-33704920-33705073,
chr21-33705365-33705686,
chr21-33706730-33707558,
chr21-33708388-33709548,
chr21-33711416-33711912,
chr21-33712966-33713558,
chr21-33713815-33714138,
chr21-33715952-33716503,
chr21-33717558-33717807,
chr21-33719132-33719441,
chr21-33723328-33723674,
chr21-33750128-33750351,
chr21-33751050-33751840,
chr21-33753553-33753764,
chr21-33754502-33754741,
chr21-33756544-33757290,
chr21-33757983-33758494,
chr21-33759666-33760176,
chr21-33760388-33764540,
chr21-33765295-33765554,
chr21-33766655-33767079,
chr21-33767338-33767672,
chr21-33768415-33770555,
chr21-33771637-33772371,
chr21-33773091-33773354,
chr21-33773678-33774027,
chr21-33775163-33775433,
chr21-33778597-33778946,
chr21-33780702-33781002,
chr21-33781617-33781887,
chr21-33782467-33783022,
chr21-33783231-33783512,
chr21-33784205-33784483,
chr21-33789720-33790068,
chr21-33794698-33794955,
chr21-33795191-33795491,
chr21-33795906-33796270,
chr21-33798590-33800042,
chr21-33898105-33899425,
chr21-33899805-33900206,
chr21-33901298-33903251,
chr21-33904131-33904969,
chr21-33913803-33916898,
chr21-33917462-33917726,
chr21-33918896-33919235,
chr21-34050402-34050635,
chr21-34050980-34051129,
chr21-34052018-34052178,
chr21-34052673-34053743,
chr21-34055195-34056225,
chr21-34056635-34056904,
chr21-34057409-34058775,
chr21-34058985-34059676,
chr21-34061874-34062292,
chr21-34065023-34065565,
chr21-34066661-34066866,
chr21-34067086-34067512,
chr21-34070416-34071494,
chr21-34071705-34071912,
chr21-34072131-34076800,
chr21-34077159-34078441,
chr21-34078920-34079706,
chr21-34080088-34080383,
chr21-34082385-34083569,
chr21-34085588-34085895,
chr21-34086684-34087838,
chr21-34088093-34088654,
chr21-34089020-34089310,
chr21-34091155-34093003,
chr21-34094869-34095426,
chr21-34104657-34104885,
chr21-34105940-34106333,
chr21-34106889-34107301,
chr21-34108598-34109091,
chr21-34110152-34111183,
chr21-34113242-34114585,
chr21-34116062-34116265,
chr21-34116571-34116741,
chr21-34122037-34122493,
chr21-34178955-34179711,
chr21-34180822-34181533,
chr21-34183589-34183774,
chr21-34185182-34185546,
chr21-34185935-34187049,
chr21-34187656-34188698,
chr21-34189568-34191338,
chr21-34191993-34192521,
chr21-34194240-34194522,
chr21-34195280-34195731,
chr21-34196992-34197413,
chr21-34198106-34198720,
chr21-34199128-34205356,
chr21-34205572-34206804,
chr21-34207665-34207765,
chr21-34217743-34218130,
chr21-34219966-34220375,
chr21-34221388-34222210,
chr21-34222518-34224255,
chr21-34226162-34226442,
chr21-34227266-34227720,
chr21-34227982-34228470,
chr21-34230119-34230450,
chr21-34231432-34232119,
chr21-34235033-34236369,
chr21-34239048-34239498,
chr21-34241424-34241738,
chr21-34242589-34245639,
chr21-34248419-34248765,
chr21-34249603-34249843,
chr21-34264956-34265232,
chr21-34269604-34269956,
chr21-34270378-34270876,
chr21-34271378-34273054,
chr21-34273641-34274038,
chr21-34330025-34330426,
chr21-34332972-34333971,
chr21-34334498-34338506,
chr21-34339763-34340385,
chr21-34340726-34341087,
chr21-34341939-34344393,
chr21-34344734-34353465,
chr21-34355390-34355626,
chr21-34356201-34356732,
chr21-34360486-34364137,
chr21-34364518-34364800,
chr21-34365500-34365847,
chr21-34366487-34368638,
chr21-34369248-34369608,
chr21-34371955-34372730,
chr21-34373717-34374267,
chr21-34374742-34376256,
chr21-34501761-34502015,
chr21-34504010-34504283,
chr21-34504884-34505791,
chr21-34506232-34507063,
chr21-34508107-34513689,
chr21-34514406-34516103,
chr21-34516659-34519824,
chr21-34520257-34523372,
chr21-34523800-34530931,
chr21-34531262-34532028,
chr21-34532557-34533261,
chr21-34533706-34535019,
chr21-34535906-34537698,
chr21-34538488-34538934,
chr21-34541693-34541899,
chr21-34542587-34546109,
chr21-34546467-34546852,
chr21-34547080-34547346,
chr21-34548664-34549336,
chr21-34598744-34600193,
chr21-34600852-34607197,
chr21-34607735-34607972,
chr21-34609310-34609958,
chr21-34610309-34610570,
chr21-34612457-34613145,
chr21-34613828-34615776,
chr21-34616709-34617250,
chr21-34618035-34618756,
chr21-34622856-34623945,
chr21-34627743-34628123,
chr21-34628717-34635854,
chr21-34636670-34636905,
chr21-34638697-34639182,
chr21-34640014-34641524,
chr21-34642001-34643001,
chr21-34644175-34644509,
chr21-34644848-34645270,
chr21-34645493-34646188,
chr21-34646765-34647040,
chr21-34647557-34648808,
chr21-34874329-34876263,
chr21-34876603-34893358,
chr21-34894062-34895143,
chr21-34895350-34895823,
chr21-34897971-34898224,
-
Co-expression with cohesin genes Rho = 0.3042
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.159
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.892
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Keratinocytes192627,Aorta,K1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,iPSC,Liver,OCI-AML-3,HCT-116,Germinal-Center-B,REC-1,Hep-G2,Kelly,H1-hESC,HCC1599,HT-1376,Motor-Neuron,MSLCL,NaiveB,U-937,BMEC,HUES64,H1-NPC,CyT49-hESC,HUVEC,HL-60,RT-112,CyT49-endoderm,Skin-Fibroblast,Left-Ventricle,KBM-7,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR,U251
- Related loop:
chr21:32825000-32850000~~chr21:33875000-33900000,
chr21:33199112-33200780~~chr21:33901120-33902781,
chr21:33200000-33225000~~chr21:33875000-33900000,
chr21:33200000-33225000~~chr21:33900000-33925000,
chr21:33225000-33250000~~chr21:33875000-33900000,
chr21:33375000-33400000~~chr21:33875000-33900000,
chr21:33550000-33575000~~chr21:33900000-33925000,
chr21:33575000-33600000~~chr21:33875000-33900000,
chr21:33575000-33600000~~chr21:33900000-33925000,
chr21:33600000-33625000~~chr21:33875000-33900000,
chr21:33600000-33625000~~chr21:33900000-33925000,
chr21:33605093-33606879~~chr21:33900854-33903147,
chr21:33605131-33606865~~chr21:33900846-33903177,
chr21:33608067-33609369~~chr21:33901061-33902630,
chr21:33625000-33650000~~chr21:33875000-33900000,
chr21:33650000-33675000~~chr21:33875000-33900000,
chr21:33650000-33675000~~chr21:33900000-33925000,
chr21:33675000-33700000~~chr21:33875000-33900000,
chr21:33675000-33700000~~chr21:33900000-33925000,
chr21:33700000-33725000~~chr21:33875000-33900000,
chr21:33700000-33725000~~chr21:33900000-33925000,
chr21:33750000-33775000~~chr21:33875000-33900000,
chr21:33750000-33775000~~chr21:33900000-33925000,
chr21:33775000-33800000~~chr21:33875000-33900000,
chr21:33875000-33900000~~chr21:34325000-34350000,
chr21:33900000-33925000~~chr21:34050000-34075000,
chr21:33900000-33925000~~chr21:34075000-34100000,
chr21:33900000-33925000~~chr21:34100000-34125000,
chr21:33900000-33925000~~chr21:34175000-34200000,
chr21:33900000-33925000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34325000-34350000,
chr21:33900000-33925000~~chr21:34350000-34375000,
chr21:33900000-33925000~~chr21:34500000-34525000,
chr21:33900000-33925000~~chr21:34525000-34550000,
chr21:33900000-33925000~~chr21:34600000-34625000,
chr21:33900000-33925000~~chr21:34625000-34650000,
chr21:33900000-33925000~~chr21:34875000-34900000,
chr21:33900000-33925000~~chr21:36025000-36050000,
chr21:33914721-33916686~~chr21:34347220-34348816,
chr21:33914796-33916595~~chr21:34351238-34352674,
chr21:33914900-33916542~~chr21:34347151-34348865,
chr21:33915150-33916451~~chr21:34347188-34348864,
chr21:7750000-7775000~~chr21:33875000-33900000,
chr21:7750000-7775000~~chr21:33900000-33925000,
chr21:7800000-7825000~~chr21:33900000-33925000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFIATA1HD5, 4DNFIHMCILEN, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, 4DNFI6XD6JAQ, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, GSE126792, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIXU2KPNQ, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIJBJ6QVH, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, 4DNFIYDBBSE3, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, GSE125243, 4DNFIPAF4PYT, GSE48592, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, 4DNFIRZA6EV6, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, 4DNFI6EIFUZI, ENCSR866FWQ, 4DNFIBCIA62Q, 4DNFII6AN691, GSE111537, GSE131580, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR128RPG, 4DNFITS16HW8, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: K-562,U2OS,HL-60,HeLa-S3
- Cohesin-DEGs, number of studies: 4
- Cohesin-DEGs, study: GSE131581,GSE131448,GSE89799,GSE130558
- Cohesin-DEGs, subunit: WAPL,Rad21,SA2