Deatailed information for gene ENSG00000242220
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00036241
- Gene Symbol: TCP10L
- Ensembl ID: ENSG00000242220
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Gene locus: chr21:32576658-32585511
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.2676
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.806
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,Keratinocytes192627,K1,H1-Mesendoderm,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,iPSC,REC-1,OCI-AML-3,HCT-116,Hep-G2,Kelly,H1-hESC,HCC1599,Motor-Neuron,U-937,HUES64,H1-NPC,CyT49-hESC,HUVEC,HL-60,RT-112,CyT49-endoderm,KBM-7,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:22775000-22800000~~chr21:32575000-32600000,
chr21:31175000-31200000~~chr21:32575000-32600000,
chr21:31725000-31750000~~chr21:32575000-32600000,
chr21:31850000-31875000~~chr21:32575000-32600000,
chr21:31872680-31874526~~chr21:32577373-32579026,
chr21:32250000-32275000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32300000-32325000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32400000-32425000~~chr21:32550000-32575000,
chr21:32400000-32425000~~chr21:32575000-32600000,
chr21:32402135-32404476~~chr21:32577078-32579215,
chr21:32402391-32404315~~chr21:32577279-32579257,
chr21:32402609-32404463~~chr21:32577411-32579232,
chr21:32450000-32475000~~chr21:32575000-32600000,
chr21:32475000-32500000~~chr21:32575000-32600000,
chr21:32550000-32575000~~chr21:34350000-34375000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, 4DNFIATA1HD5, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIWNNO89O, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, 4DNFISPUVQHA, GSE112000, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, 4DNFIOX3BGNE, 4DNFINW9P6XF, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIIMZB6Y9, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFIYJ4TWB8, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, GSE120294, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, 4DNFI15FPSQL, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, 4DNFIJBJ6QVH, ENCSR550JLK, 4DNFI3A3VYWU, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR379CII, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, 4DNFI4TJTL7A, ENCSR255XYX, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR094EIC, GSE116869, 4DNFIRZA6EV6, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, 4DNFI6EIFUZI, ENCSR866FWQ, 4DNFII6AN691, GSE111537, GSE131580, 4DNFIOUSETUP, 4DNFIXGXD67I, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence: HeLa-S3
- Cohesin-DEGs, number of studies: 1
- Cohesin-DEGs, study: GSE130558
- Cohesin-DEGs, subunit: WAPL