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Basic information

CohesinDB ID: CDBG00036376

Gene Symbol: AP001432.1

Ensembl ID: ENSG00000242553

Gene locus: chr21:37221418-37237744 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.5673 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.320
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,TAMR-MCF7,MB157,MCF-7,GM12878,A-549,PAEC,SU-DHL-2,H9-hESC,NCI-H1437,HT-1197,H1-hESC,Motor-Neuron,U-937,HUES64,SU-DHL-4,Skin-Fibroblast,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE95015, GSE118716, ENCSR499RVD, ENCSR478BMT, ENCSR732QOH, 4DNFIA6NSSBJ, 4DNFIYD8LO9Z, ENCSR668RDP, GSE97394, ENCSR587DSF, 4DNFIE8T8JZ8, ENCSR128RPG, ENCSR658RQQ, Direct, GSE165038, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIYIAUEPW, ENCSR228TUX, 4DNFIC3HAU11, 4DNFI2J1ODWB, GSE105028, ENCSR833CMG, GSE116869

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000242553