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Basic information

CohesinDB ID: CDBG00037259

Gene Symbol: AL109761.1

Ensembl ID: ENSG00000244676

Gene locus: chr21:17793487-17810845 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2433 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.553
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: TAMR-MCF7,MB157,H1-Mesenchymal,Olfactory,MCF-7,HEK293T,GM12878,K-562,A-549,HFFc6,HeLa-S3,H9-hESC,HCT-116,H1-hESC,Motor-Neuron,NaiveB,HUES64,RT-112,CC-2551,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, GSE118716, GSE108787, 4DNFI5SUHCGZ, GSE84022, GSE120294, 4DNFIZ4F74QR, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR866FWQ, 4DNFIYD8LO9Z, GSE155380, GSE97394, GSE80820, 4DNFI9YAVTI1, GSE52457, Direct, 4DNFIXWCLD4M, 4DNFIX7H3CE2, 4DNFIV56OFE3, 4DNFI1UEG1HD, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIOCW5AEM, 4DNFI9ZWZ5BS, 4DNFIFI6NIKJ, GSE105028, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE116869

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000244676