Deatailed information for gene ENSG00000251778
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00039916
- Gene Symbol: AP001619.3
- Ensembl ID: ENSG00000251778
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Gene locus: chr21:41882204-41882300
Strand: +
- Gene type: snoRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0385
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,RT-112,MB157,H1-hESC,A-549,HT-1376,HAP1,H9-hESC,Olfactory,SU-DHL-4
- Related loop:
chr21:41611484-41613992~~chr21:41877559-41880450,
chr21:41815741-41818325~~chr21:41876469-41879286,
chr21:41832160-41834589~~chr21:41876469-41879286,
chr21:41875000-41900000~~chr21:41975000-42000000,
chr21:41875000-41900000~~chr21:42000000-42025000,
chr21:41875000-41900000~~chr21:42100000-42125000,
chr21:41876408-41880502~~chr21:42116480-42118891,
chr21:41877545-41880451~~chr21:42008763-42011946,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIBT4EAKN, ENCSR244BBG, GSE95015, 4DNFI6EIFUZI, 4DNFIF2D3TL9, ENCSR658RQQ, Direct, ENCSR933UZH, GSE105028, GSE155380, GSE116869, ENCSR981FNA
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .