Deatailed information for gene ENSG00000252915
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00040682
- Gene Symbol: Y_RNA
- Ensembl ID: ENSG00000252915
-
Gene locus: chr21:39344536-39344628
Strand: +
- Gene type: misc_RNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1569
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.905
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,NCI-H1437,GM12878,Skin-Fibroblast,HT-1376,H1-hESC,HAP1,SU-DHL-4
- Related loop:
chr21:38800000-38825000~~chr21:39325000-39350000,
chr21:39313200-39315343~~chr21:39347346-39350688,
chr21:39313201-39315232~~chr21:39347651-39350715,
chr21:39313213-39315341~~chr21:39347106-39349452,
chr21:39313217-39315223~~chr21:39347655-39350638,
chr21:39313225-39315438~~chr21:39347557-39350333,
chr21:39320997-39322719~~chr21:39347655-39350638,
chr21:39325000-39350000~~chr21:39425000-39450000,
chr21:39347365-39350526~~chr21:39387267-39389644,
chr21:39347651-39350709~~chr21:39387578-39389687,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI3A3VYWU, ENCSR732QOH, ENCSR255XYX, ENCSR658RQQ, GSE95015, Direct, ENCSR933UZH, ENCSR833CMG, 4DNFIBN9K4V9, ENCSR981FNA, ENCSR587DSF
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .