Deatailed information for gene ENSG00000252950
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00040706
- Gene Symbol: RNA5SP490
- Ensembl ID: ENSG00000252950
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Gene locus: chr21:32563074-32563210
Strand: +
- Gene type: rRNA_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1142
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.802
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-endodermal,IMR-90,Keratinocytes192627,H1-Mesendoderm,Olfactory,Hepatocyte-H9,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,OCI-AML-3,HT-1197,H1-hESC,Motor-Neuron,HUES64,H1-NPC,HUVEC,CyT49-hESC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,HFF-hTERT,HAP1
- Related loop:
chr21:32250000-32275000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32400000-32425000~~chr21:32550000-32575000,
chr21:32401983-32404518~~chr21:32561692-32563664,
chr21:32401987-32404521~~chr21:32561668-32563604,
chr21:32402003-32404663~~chr21:32561174-32563689,
chr21:32402043-32404526~~chr21:32561117-32563575,
chr21:32402050-32404562~~chr21:32561335-32563466,
chr21:32402058-32404410~~chr21:32561685-32563661,
chr21:32402099-32404537~~chr21:32561649-32563602,
chr21:32402112-32404476~~chr21:32561642-32563675,
chr21:32402211-32404532~~chr21:32561346-32563661,
chr21:32402351-32404483~~chr21:32561228-32563461,
chr21:32402421-32404494~~chr21:32561489-32563438,
chr21:32402553-32404518~~chr21:32561671-32563639,
chr21:32402573-32404309~~chr21:32561693-32563678,
chr21:32402575-32404404~~chr21:32561712-32563519,
chr21:32412635-32415974~~chr21:32561117-32563575,
chr21:32413356-32415861~~chr21:32561346-32563661,
chr21:32413407-32415950~~chr21:32561489-32563438,
chr21:32413601-32416113~~chr21:32561649-32563602,
chr21:32413701-32415963~~chr21:32561671-32563639,
chr21:32550000-32575000~~chr21:34350000-34375000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQWD8ZYD, GSE95015, 4DNFIRZA6EV6, ENCSR866FWQ, GSE94872, 4DNFIMROE6N4, GSE108787, 4DNFIB7QTIMH, ENCSR794RDS, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIDSWKFF5, 4DNFIW8TIFI5, 4DNFIEYQ5ZIR, ENCSR478BMT, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIA6NSSBJ, 4DNFIF2D3TL9, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIP25GZGA, 4DNFIREVU1Z5, ENCSR668RDP, 4DNFIRKGMZRQ, ENCSR381DCY, 4DNFIYD8LO9Z, GSE99541, GSE111537, GSE97394, ENCSR587DSF, 4DNFIL9M97T2, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, ENCSR550JLK, 4DNFI3A3VYWU, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFI6JJQKFJ, 4DNFIK61ILGM, GSE108869, 4DNFIEJEFCAM, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR305RTT, ENCSR404HWQ, ENCSR247RGI, ENCSR338WUS, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, ENCSR094EIC, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, GSE105028, 4DNFIBKZK63V, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .